Regulated Operon: mtnWXBD

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
ykrW mtnW + 1426342..1427586
COG1850 ykrW-BAC  
ykrX mtnX + 1427583..1428290
COG4359  
ykrY mtnY, mtnB + 1428248..1428877
COG0235  
ykrZ mtnZ, mtnD + 1428892..1429428
COG1791  

Operon evidence: Northern blot (3.2 kb transcript)
Reference: Sekowska A & Danchin A (2002)
Comments: An 2.5 kb transcript was also found, which may be the result of RNA processing at the end of the S-box regulatory sequence of the 5' extremity of the transcript

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -50:+26 1426115..1426190 TACCCAAAAAAGCATTGACAAGACCTTATAACGATGGGATAATTCAAAATAATTTATAAAATCTATATTTTCTTAT Sekowska A & Danchin A (2002): PE
SigA Promoter -53:+11 1426131..1426194 GACAAGACCTTATAACGATGGGATAATTCAAAATAATTTATAAAATCTATATTTTCTTATCAAG Sekowska A & Danchin A (2002): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
AATAAGCGTGAGATAGCCCCGTTCATCGAACGGGGCTTTTTATATTTATTG
               >>>>>>>>>   <<<<<<<<<
1429439..1429459
11..31
-18.4
 ykrZ

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai