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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | nifS-yrxA |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| nifS | + | 2848794..2849981 | COG1104 | |||
| yrxA | nadR | + | 2849941..2850477 | COG1827 |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Sun D & Setlow P (1993) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -47:+18 | 2848710..2848774 | TTACACCTGTCTTGACACCTATATTTACACAAGGATAAAATAAACTCAAGAGTTTTTTATGGAGA |
Sun D & Setlow P (1993): PE |
| YrxA | Negative | -68:+40 | 2848689..2848796 | CATATGCCATCCTCCTGTTGTTTACACCTGTCTTGACACCTATATTTACACAAGGATAAAATAAACTCAAGAGTTTTTTATGGAGAACGGATGGAGGAAGACCGGATG |
Sun D & Setlow P (1993): HM Rossolillo P, et al. (2005): GS RT-PCR |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGCCCTCTAGTGGGCTTTTTTTATAATTGG >>>> <<<< |
yrxA |
|