Regulated Operon: ntdABC-glcP

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
yhjL ntdA - 1127591..1128916
COG0399  
yhjK ntdB - 1126759..1127619
COG0561  
yhjJ ntdC - 1125704..1126756
COG0673  
glcP yhjI - 1124427..1125632 glucose/mannose:H+ symporter COG0738  

Operon evidence: Northern blotting (3.2 kb and weak 4.5 kb transcripts)
Reference: Inaoka T, et al. (2007)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -50:+10 1128949..1129008 CTTAAAAAAGTTGTTGACATGTTACCGATTTCAGAAACTAGGATAAATTTGTAATAAATT Inaoka T, et al. (2004): PE
YhjM Positive ND ND ND Inaoka T, et al. (2004): RG

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
TGAAAAAGATAGAAACAAAGCGAAAAACACGCACCGCAGTGCGTGTTTTTTATTTAAAAA
                           >>>>>>>    <<<<<<<
1124274..1124291
136..153
-12.2
 glcP
GAGAGAAGTTACTAAAAAAGCAGGAATTTACTTTCCTGCTTTTTCATATAGGGG
                   >>>>>>>      <<<<<<<
1125656..1125675
29..48
-11.6
 yhjJ

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai