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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | pbpD-yuxK |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| pbpD | + | 3232955..3234829 | penicillin-binding protein 4 | COG0744 | ||
| yuxK | yugD | + | 3234850..3235263 | COG3011 |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Popham DL & Setlow P (1994), Genbank Z93933 |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -47:+18 | 3232888..3232952 | CTAAATTTAACCTTCTCGTAATCTCAAAAGAATGGTACGATATGGCTAGAATTTAGGAGAAAAGA |
Popham DL, et al. (1994): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CAAAATCCTAAAACGGCTTCGTTTTAGGATTTTGTCATCTATTC >>>>>>>>>> <<<<<<<<<< |
yuxK |
|