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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | pckA |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| pckA | ppc | + | 3128579..3130162 | phosphoenolpyruvate carboxykinase | COG1866 | pckA-BAC pckA-STA ppc-STR |
| Operon evidence: | Genome analysis; upstream and downstream genes are on the opposite strand |
|---|---|
| Reference: | Lapidus A, et al. (1997), Genbank AF008220 |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| YqzB | Negative | -51:+12 | 3128489..3128551 | AAAACAATAAATAGTATAGACTATTTGAAAATATATGTTATACTAATTCACAATTAGCAAAAC |
Servant P, et al. (2005): RG DB GS FT |
| SigA | Promoter | -59:+15 | 3128481..3128554 | ACACACAAAAAACAATAAATAGTATAGACTATTTGAAAATATATGTTATACTAATTCACAATTAGCAAAACACA |
Servant P, et al. (2005): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CAAAAGCCAAGAGCAATTATGCTCTTGGCTTGTTTTAATTGACG >>>>>>>>>> <<<<<<<<<< |
pckA |
|