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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | pcrBA-ligA-yerH |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| pcrB | yerE | + | 717961..718647 | PcrB homolog | COG1646 | x1013-BAC |
| pcrA | yerF | + | 718709..720928 | ATP-dependent DNA helicase | COG0210 | pcrA-BAC pcrA-STR |
| ligA | lig, yerG | + | 720952..722958 | DNA ligase | COG0272 | ligA-BAC ligA-BAC |
| yerH | + | 722974..724164 | COG4851 |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Petit MA, et al. (1998) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| LexA | Negative | ND | 718669..718692 | ATGATAGAACGTATGTTTTGTATA |
Au N, et al. (2005): GS AR DB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| ATGACTGATAGAAAACCCTTGTGCCATATTGGCACAAGGGTTTTTATGTTACAAT >>>>>>>>>>> <<<<<<<<<<< |
yerH |
|