 |
Copyright: Human Genome Center, Inst. Med.
Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Factor type | UmuD/LexA |
|---|---|
| SWISS-PROT | P31080 |
| SubtiList | BG10678 |
| Consensus seq. | CGAACATATGTTCG |
| Comment | Negative regulator of DNA damage-inducible genes; SOS-like or SOS regulon; analogue of E. coli LexA |
| Link to | Phylogenetic profile, Weight matrix, Motif alignment & Similar conserved hexameric motifs |
| Operon | Regulated Gene | Sigma | Regulation | Absolute position | Location | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|---|---|
| aprX | aprX | SigA | Negative | 1862069..1862092 | -157:-134 | TAATACGAACAAACGTTCTTTTTC |
Au N, et al. (2005): GS AR DB |
| dinB | dinB | None | Negative | 608346..608369 | None | ACATAAGAACTCATGTTCGTGTAT |
Cheo DL, et al. (1991): DB RG Lovett CM Jr, et al (1993): GS Miller MC, et al. (1996): GS Winterling KW, et al. (1998): GS Au N, et al. (2005): GS AR DB Groban ES, et al. (2005): GS |
| tagC | tagC | None | Negative | 3682365..3682388 | None | AAAACAGAACAAGTGTTCTTTTTT |
Raymond-Denise A & Guillen N (1991): DB RG Cheo DL, et al. (1991): DB RG DP Lovett CM Jr, et al (1993): GS FT Miller MC, et al. (1996): GS FT Winterling KW, et al. (1998): GS Au N, et al. (2005): GS AR DB Groban ES, et al. (2005): GS |
| tagC | tagC | None | Negative | 3682395..3682418 | None | AATACCGAACGTATGTTTGCTTTA |
Raymond-Denise A & Guillen N (1991): DB RG Cheo DL, et al. (1991): DB RG DP Lovett CM Jr, et al (1993): GS FT Miller MC, et al. (1996): GS FT Winterling KW, et al. (1998): GS Au N, et al. (2005): GS AR DB Groban ES, et al. (2005): GS |
| dnaE | dnaE | None | Negative | 2993712..2993735 | None | AAAAAAGAACATTTGTTTCTTTTG |
Le Chatelier E, et al. (2003): DB RG, Western blot Au N, et al. (2005): GS |
| hbs | hbs | None | Negative | 2385280..2385303 | None | AAAAAGGAATATTCGTTCGGTAAA |
Au N, et al. (2005): GS |
| lexA | lexA | None | Negative | 1917519..1917542 | -44:-21 | TTTTTCGAACCTATGTTTGTACTG |
Raymond-Denise A & Guillen N (1991): DB RG Haijema BJ, et al. (1996): DB RG DP GS Winterling KW, et al. (1998): GS FT Au N, et al. (2005): GS AR DB |
| lexA | lexA | None | Negative | 1917548..1917571 | -72:-49 | ATATACGAACAAACGTTTCTGTCA |
Raymond-Denise A & Guillen N (1991): DB RG Haijema BJ, et al. (1996): DB RG DP GS Winterling KW, et al. (1998): GS FT Au N, et al. (2005): GS AR DB |
| lexA | lexA | None | Negative | 1917585..1917608 | -109:-86 | CAACAGGAATGTTTGTTCGCATTT |
Raymond-Denise A & Guillen N (1991): DB RG Haijema BJ, et al. (1996): DB RG DP GS Winterling KW, et al. (1998): GS FT Au N, et al. (2005): GS AR DB |
| parEC | parE | None | Negative | 1932462..1932485 | None | ATAAACAAACATACGTTCTCATAG |
Au N, et al. (2005): GS AR DB |
| pcrBA-ligA-yerH | pcrA | None | Negative | 718669..718692 | None | ATGATAGAACGTATGTTTTGTATA |
Au N, et al. (2005): GS AR DB |
| recA | recA | SigA | Negative | 1763826..1763849 | -60:-37 | AAATCCGAATATGCGTTCGCTTTT |
Raymond-Denise A & Guillen N (1992): DB RG Lovett CM Jr, et al (1993): GS, promoter mutations Haijema BJ, et al. (1996): DB GS DP, Western blot Miller MC, et al. (1996): GS, in-vitro transcription Winterling KW, et al. (1997): GS RG, promoter mutations Winterling KW, et al. (1998): GS FT RG, promoter mutation Hamoen LW, et al. (2001): GS Au N, et al. (2005): GS AR DB Groban ES, et al. (2005): GS, promoter mutations |
| ruvAB | ruvA | None | Negative | 2836056..2836079 | None | AGAAGCGAACATATGTTAACTTTT |
Au N, et al. (2005): GS AR DB |
| sda | sda | SigA | Negative | 2646548..2646571 | -47:-24 | ATAACAGAACGATTGTTCTTATAT |
Au N, et al. (2005): GS |
| uvrBA | uvrB | None | Negative | 3614034..3614057 | None | ACCACCGAACTTTAGTTCGTATTT |
Cheo DL, et al. (1991): DB RG DP Lovett CM Jr, et al (1993): GS Winterling KW, et al. (1998): GS Au N, et al. (2005): GS AR DB Groban ES, et al. (2005): GS |
| uvrC | uvrC | None | Negative | 2911996..2912019 | None | AGAGAAAAACAAACGTTCGTGTTA |
Au N, et al. (2005): GS AR DB |
| vpr | vpr | None | Negative | 3906672..3906695 | None | GTATACGAACGTATATTCCTAACT |
Au N, et al. (2005): GS |
| xkdA | xkdA | None | Negative | 1320488..1320511 | None | AAAACAGAACACACGTTCGAAAGG |
Au N, et al. (2005): GS AR DB |
| ybaK-cwlD | ybaK | SigG | Negative | 155964..155987 | -124:-101 | ATTACAGAACATTTGTTCCTCACC |
Au N, et al. (2005): GS AR DB |
| ydgGH | ydgG | None | Negative | 608346..608369 | None | ATACACGAACATGAGTTCTTATGT |
Au N, et al. (2005): GS |
| ydiOP | ydiO | None | Negative | 654702..654725 | None | GATAAAGAACATTCGTTCTTGTAT |
Au N, et al. (2005): GS AR DB |
| yhaONM | yhaO | None | Negative | 1064086..1064109 | None | TTGACAGAACGTGCATTCGCAAGA |
Au N, et al. (2005): GS AR DB |
| yhaZ | yhaZ | None | Negative | 1055558..1055581 | None | GATCCAGAACGTACATTCCCATAC |
Au N, et al. (2005): GS AR DB |
| yhjD | yhjD | None | Negative | 1120718..1120741 | None | CAAATAGAACAAACGTTCCCTTAG |
Au N, et al. (2005): GS AR DB |
| yhjE-sipV | yhjE | None | Negative | 1120718..1120741 | None | CTAAGGGAACGTTTGTTCTATTTG |
Au N, et al. (2005): GS |
| ykvR | ykvR | None | Negative | 1446431..1446453 | None | TTAACGAACGTATGTTTGTAAAG |
Au N, et al. (2005): GS |
| yneAB-ynzC | yneA | None | Negative | 1917519..1917542 | None | CAGTACAAACATAGGTTCGAAAAA |
Kawai Y, et al. (2003): NB Au N, et al. (2005): GS AR DB |
| yneAB-ynzC | yneA | None | Negative | 1917548..1917571 | None | TGACAGAAACGTTTGTTCGTATAT |
Kawai Y, et al. (2003): NB Au N, et al. (2005): GS AR DB |
| yneAB-ynzC | yneA | None | Negative | 1917585..1917608 | None | AAATGCGAACAAACATTCCTGTTG |
Kawai Y, et al. (2003): NB Au N, et al. (2005): GS AR DB |
| yolC | yolC | None | Negative | 2271207..2271230 | None | TTAACAGAACAAACGTTCTTCATT |
Au N, et al. (2005): GS |
| yolC | yolC | None | Negative | 2271237..2271260 | None | AAACCAGAACAAAAGTTCGATGTA |
Au N, et al. (2005): GS |
| yolD-uvrX | yolD | None | Negative | 2271237..2271260 | None | TACATCGAACTTTTGTTCTGGTTT |
Au N, et al. (2005): GS |
| yolD-uvrX | yolD | None | Negative | 2271207..2271230 | None | AATGAAGAACGTTTGTTCTGTTAA |
Au N, et al. (2005): GS |
| yorBC | yorB | None | Negative | 2187368..2187391 | None | TAACGAGAACACTTGTTCCCTTTA |
Au N, et al. (2005): GS |
| yozLK-yobH | yozL | None | Negative | 2064138..2064161 | None | TACATCGAACTTTTGTTCTGATCT |
Au N, et al. (2005): GS |
| yozLK-yobH | yozL | None | Negative | 2064108..2064131 | None | AATAAGGAACGTTTGTTCTGTTGA |
Au N, et al. (2005): GS |
| yozM | yozM | None | Negative | 2064108..2064131 | None | TCAACAGAACAAACGTTCCTTATT |
Au N, et al. (2005): GS |
| yozM | yozM | None | Negative | 2064138..2064161 | None | AGATCAGAACAAAAGTTCGATGTA |
Au N, et al. (2005): GS |
| ypuD | ypuD | None | Negative | 2431426..2431449 | None | AAAACAGAACATAAATTCGTATAT |
Au N, et al. (2005): GS |
| yqhB | yqhB | None | Negative | 2560683..2560706 | None | TCCTCCAAACTTTTGTTCTTTATT |
Au N, et al. (2005): GS |
| yqjWX | yqjW | None | Negative | 2465027..2465050 | None | TAAAACGAACATACTTTCGCATAT |
Au N, et al. (2005): GS AR DB |
| yqjWX | yqjW | None | Negative | 2464999..2465022 | None | AAAAGCGAACATAAGTTCTTTTTA |
Au N, et al. (2005): GS AR DB |
| yqxL | yqxL | SigB | Negative | 2560683..2560706 | None | AATAAAGAACAAAAGTTTGGAGGA |
Au N, et al. (2005): GS |
| yqzH | yqzH | None | Negative | 2465027..2465050 | None | ATATGCGAAAGTATGTTCGTTTTA |
Au N, et al. (2005): GS |
| yqzH | yqzH | None | Negative | 2464999..2465022 | None | TAAAAAGAACTTATGTTCGCTTTT |
Au N, et al. (2005): GS |
|