Regulated Operon: pspA-ydjGHI

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
pspA ydjF + 670793..671476 phage shock protein A homolog COG1842  
ydjG
+ 671542..672567

 
ydjH
+ 672567..673331
COG1512  
ydjI
+ 673362..674333
COG4260  

Operon evidence: Northern blotting (3.6 kb transcript)
Reference: Serizawa M, et al. (2004), Wiegert T, et al. (2001), Kasahara Y, et al. (1997)
Comments: The readthrough terminator downstream of pspA leads to a 0.7 kb transcript.

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigW Promoter -40:+5 670717..670761 AAAAGTGAAACTTTTAACGATAATAAATAGTATATGTAACAAGGG Wiegert T, et al. (2001): AR PE DB RG
Cao M, et al. (2002): ROMA AR RG PE RO
Cao M, et al. (2002): AR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
GAAAAGTCCGGAGTGATCAGCACTCGGGACTTTTTTATTTAGGAG
     >>>>>>>>>>     <<<<<<<<<<
674351..674375
18..42
-15.0
 ydjI
AGGAGGCCGCAGCTTTCGGCTGCGGCGTCATTTTATCATAA
     >>>>>>>>>   <<<<<<<<<
671487..671507
11..31
-21.5
 pspA

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai