Transcription factor: SigW

Factor type	ND
SWISS-PROT	Q45585
SubtiList	BG11573
Consensus seq.	TGAAACN(16)CGTA
Comment	ECF-type sigma factor
Link to	Phylogenetic profile, Weight matrix, Motif alignment & Similar conserved hexameric motifs

Operon	Regulated Gene	Absolute position	Location	Binding seq.(cis-element)	Experimental evidence
abh	abh	`1517073..1517114`	`-36:+6`	CGGGAAACTTTTTCAAAGTTTCATTCGTCTACGATATATTGA	Huang X & Helmann JD (1998): PE Huang X, et al. (1998): RO
yabMNOPQ-divIC-yabR	divIC	`69016..69057`	`-36:+6`	TTTGAAACTTCTTCCTGTGAAAATGCGTCTAACTTTTAGACG	Huang X, et al. (1998): RO Cao M, et al. (2002): AR
pbpE-racX	pbpE	`3534514..3534556`	`-40:+3`	ATATTTGAAACGTTAGTAGGTTAGTAACGTACAGAGATATGGG	Huang X, et al. (1999): S1 DB RG Popham DL, et al. (1993): PE Cao M, et al. (2002): AR
pbpX	pbpX	`1765049..1765087`	None	TTTTTGACAACTTTTTTAGGGCTTTATTCGTCTAACAAA	Cao M & Helmann JD (2004): RG
pspA-ydjGHI	pspA	`670717..670761`	`-40:+5`	AAAAGTGAAACTTTTAACGATAATAAATAGTATATGTAACAAGGG	Wiegert T, et al. (2001): AR PE DB RG Cao M, et al. (2002): ROMA AR RG PE RO Cao M, et al. (2002): AR
sigW-ybbM	sigW	`194771..194813`	`-39:+4`	AAAATTGAAACCTTTTGAAACGAAGCTCGTATACATACAGACC	Huang X, et al. (1999): DB RG PE, in vitro transcription, RO Cao M, et al. (2002): AR
sppA-yteJ	sppA	`3020111..3020151`	`-38:+3`	TGAAGTGAAACATTTTTCATATTGAATCGTATAATGAGAGA	Huang X, et al. (1999): S1 Cao M, et al. (2002): AR
xpaC-yaaN	xpaC	`35763..35805`	None	GAAGATGAAACTTGTTTAAGGATTGAACGTAGTAGATAATAAT	Huang X, et al. (1999): RO Cao M, et al. (2002): AR
ybfO	ybfO	`249899..249937`	None	GAAAAGGAAACTTTTTCTATATCTATCTCGTAATGACTA	Cao M, et al. (2002): ROMA AR RG Cao M, et al. (2002): AR
yceCDEFGH	yceC	`311592..311634`	`-40:+3`	TTTTACGAAACTTTGATATAATAACAAACGTATATATTAGTAA	Cao M, et al. (2002): ROMA AR RG RO PE Cao M, et al. (2002): AR
ydbST	ydbS	`512310..512352`	`-38:+5`	AAGAATGAAACCTTTCTGTAAAAGAGACGTATAAATAACGACG	Huang X, et al. (1999): S1 Cao M, et al. (2002): AR
yeaA-ydjP-ydjO	yeaA	`682933..682975`	`-37:+6`	CTTTATGAAACCTTTGGCCCTATTTATCGTATTACGTAAAAAC	Huang X, et al. (1999): S1 Cao M, et al. (2002): AR
yfhKLM	yfhL	`928688..928731`	`-38:+6`	ATGCATGAAACATTTCTTCTTTCTGCACGTAACAATGAGAAAGG	Huang X, et al. (1999): S1 Cao M, et al. (2002): AR
yjbCD	yjbC	`1226135..1226178`	`-40:+4`	AAAAATGAAACCATGGCGGAAGTTCGCACGTCTTTATAGATGTA	Antelmann H, et al. (2000): PE NB Cao M, et al. (2002): HM RO RG DB Cao M, et al. (2002): AR
yjoB	yjoB	`1313695..1313737`	`-39:+4`	TGGGATGAAACAAAATGCTATGTCAATCGTATATATAACGTTC	Huang X, et al. (1999): S1 Cao M, et al. (2002): AR
yknWXYZ	yknW	`1502825..1502867`	`-39:+4`	AAACATGAAACTTTTTGATATCCTTCCCGTACTATTTGTTAGA	Huang X, et al. (1999): S1 Cao M, et al. (2002): AR
yndN	yndN	`1915804..1915848`	`-41:+4`	CTGTATGAAACTTTCTTATGAAAAAAGTCGTATATGTGGATGATC	Cao M, et al. (2001): PE RG DB OV Cao M, et al. (2002): AR
yoaF	yoaF	`2026656..2026694`	None	AATAATGAAACCCGGAGTATGCCAAGCCCGTATAACATA	Cao M, et al. (2002): ROMA AR RG Cao M, et al. (2002): AR
yoaG	yoaG	`2027880..2027918`	None	ATTTTTGAAACCTTTTATTAGCGCATTGCGTATAGCACG	Cao M, et al. (2002): ROMA AR RG Cao M, et al. (2002): AR
yobJ	yobJ	`2070322..2070364`	`-39:+4`	TTATATGAAACCTTTTTTATTTTAGCCCGTATTAAAAGTAAAT	Huang X, et al. (1999): S1 Cao M, et al. (2002): AR
yozO	yozO	`2099171..2099209`	None	AATATTGAAACTTTTTTCTCTATATGTGCGTATTACTTG	Cao M, et al. (2002): HM AR DB Cao M, et al. (2002): AR
yqeZ-yqfA-yqfB	yqeZ	`2619051..2619089`	None	AAAAATGAAACCTTTGATACATTTGTTACGTATGAAGAG	Cao M, et al. (2002): ROMA AR RG Cao M, et al. (2002): AR
yqjL	yqjL	`2476093..2476130`	None	TTAGAGAAACGATCGGCTAAGGTTCTCCGTCTCCCTAG	Cao M, et al. (2002): RO Cao M, et al. (2002): AR
yrhH	yrhH	`2777728..2777772`	`-39:+6`	TCTATTGAAACATTTTTCAATACATTGCCGTCTAGTTGGTACCTT	Huang X & Helmann JD (1998): DB RG Huang X, et al. (1998): RO Cao M, et al. (2002): AR
ysdB	ysdB	`2950493..2950535`	`-39:+4`	AAAAGTGAAACCTTTTTCTATGCTTTTCGTATTACATCAGATC	Huang X, et al. (1999): S1 Cao M, et al. (2002): AR
ythPQ	ythP	`3071176..3071213`	None	GTTAAAGAAACTTTTTTTATTCTATTTCGTAGTAAATT	Cao M, et al. (2002): ROMA AR RG Cao M, et al. (2002): AR
yuaFGI	yuaF	`3181621..3181663`	`-39:+4`	AATTTTGAAACTTTTCCCGAGGTGTCTCGTATAAATGGTAACG	Huang X, et al. (1999): S1 Cao M, et al. (2002): AR
yvlABCD	yvlA	`3607855..3607897`	`-38:+5`	GAATTTGAAACCTGAAGAGATTTTAAACGTATAAATAAGTAAA	Huang X, et al. (1999): S1 Cao M, et al. (2002): AR
ywaC	ywaC	`3949642..3949683`	`-39:+3`	ATTCATAGAACCTTGCAGCAGACAGGGACGTCTAGTACATGG	Cao M, et al. (2002): ROMA AR RG PE RO
ywbLMN	ywbN	`3927055..3927099`	`-39:+6`	AAATACAAAACAAATGATCAGTCCTATACGTCTTATGATAAATTA	Huang X, et al. (1998): RO Cao M, et al. (2002): ROMA AR RG PE
ywnJ	ywnJ	`3758641..3758693`	`-44:+9`	TTTTTTTCTGTTACTTTTTGCTTTGTTTTACCGTCTATGTAGTTACATGTAGG	Cao M, et al. (2002): AR Cao M & Helmann JD (2004): RO PE
ywrE	ywrE	`3717765..3717807`	`-39:+4`	TTTTATGAAACGTTTTTCCTTTTTCTTCGTATAAAGGTAGATT	Huang X, et al. (1999): S1 Cao M, et al. (2002): AR
yxjJI	yxjI	`3996173..3996215`	`-40:+3`	GAGCCTGAAACCTTTTCGCCACCTATCCGTAATTTCATACAAG	Huang X, et al. (1999): S1 Cao M, et al. (2002): AR
yxzE	yxzE	`3981927..3981969`	`-39:+4`	TGAAATGAAACCGGTCAGCGTTTCATCCGTATAACAGATATGG	Huang X, et al. (1999): S1