Transcription factor: SigW

Factor type ND
SWISS-PROT Q45585
SubtiList BG11573
Consensus seq. TGAAACN(16)CGTA
Comment ECF-type sigma factor
Link to Phylogenetic profile, Weight matrix, Motif alignment & Similar conserved hexameric motifs

Operon Regulated Gene Absolute position Location Binding seq.(cis-element) Experimental evidence
abh abh 1517073..1517114 -36:+6 CGGGAAACTTTTTCAAAGTTTCATTCGTCTACGATATATTGA Huang X & Helmann JD (1998): PE
Huang X, et al. (1998): RO
yabMNOPQ-divIC-yabR divIC 69016..69057 -36:+6 TTTGAAACTTCTTCCTGTGAAAATGCGTCTAACTTTTAGACG Huang X, et al. (1998): RO
Cao M, et al. (2002): AR
pbpE-racX pbpE 3534514..3534556 -40:+3 ATATTTGAAACGTTAGTAGGTTAGTAACGTACAGAGATATGGG Huang X, et al. (1999): S1 DB RG
Popham DL, et al. (1993): PE
Cao M, et al. (2002): AR
pbpX pbpX 1765049..1765087 None TTTTTGACAACTTTTTTAGGGCTTTATTCGTCTAACAAA Cao M & Helmann JD (2004): RG
pspA-ydjGHI pspA 670717..670761 -40:+5 AAAAGTGAAACTTTTAACGATAATAAATAGTATATGTAACAAGGG Wiegert T, et al. (2001): AR PE DB RG
Cao M, et al. (2002): ROMA AR RG PE RO
Cao M, et al. (2002): AR
sigW-ybbM sigW 194771..194813 -39:+4 AAAATTGAAACCTTTTGAAACGAAGCTCGTATACATACAGACC Huang X, et al. (1999): DB RG PE, in vitro transcription, RO
Cao M, et al. (2002): AR
sppA-yteJ sppA 3020111..3020151 -38:+3 TGAAGTGAAACATTTTTCATATTGAATCGTATAATGAGAGA Huang X, et al. (1999): S1
Cao M, et al. (2002): AR
xpaC-yaaN xpaC 35763..35805 None GAAGATGAAACTTGTTTAAGGATTGAACGTAGTAGATAATAAT Huang X, et al. (1999): RO
Cao M, et al. (2002): AR
ybfO ybfO 249899..249937 None GAAAAGGAAACTTTTTCTATATCTATCTCGTAATGACTA Cao M, et al. (2002): ROMA AR RG
Cao M, et al. (2002): AR
yceCDEFGH yceC 311592..311634 -40:+3 TTTTACGAAACTTTGATATAATAACAAACGTATATATTAGTAA Cao M, et al. (2002): ROMA AR RG RO PE
Cao M, et al. (2002): AR
ydbST ydbS 512310..512352 -38:+5 AAGAATGAAACCTTTCTGTAAAAGAGACGTATAAATAACGACG Huang X, et al. (1999): S1
Cao M, et al. (2002): AR
yeaA-ydjP-ydjO yeaA 682933..682975 -37:+6 CTTTATGAAACCTTTGGCCCTATTTATCGTATTACGTAAAAAC Huang X, et al. (1999): S1
Cao M, et al. (2002): AR
yfhKLM yfhL 928688..928731 -38:+6 ATGCATGAAACATTTCTTCTTTCTGCACGTAACAATGAGAAAGG Huang X, et al. (1999): S1
Cao M, et al. (2002): AR
yjbCD yjbC 1226135..1226178 -40:+4 AAAAATGAAACCATGGCGGAAGTTCGCACGTCTTTATAGATGTA Antelmann H, et al. (2000): PE NB
Cao M, et al. (2002): HM RO RG DB
Cao M, et al. (2002): AR
yjoB yjoB 1313695..1313737 -39:+4 TGGGATGAAACAAAATGCTATGTCAATCGTATATATAACGTTC Huang X, et al. (1999): S1
Cao M, et al. (2002): AR
yknWXYZ yknW 1502825..1502867 -39:+4 AAACATGAAACTTTTTGATATCCTTCCCGTACTATTTGTTAGA Huang X, et al. (1999): S1
Cao M, et al. (2002): AR
yndN yndN 1915804..1915848 -41:+4 CTGTATGAAACTTTCTTATGAAAAAAGTCGTATATGTGGATGATC Cao M, et al. (2001): PE RG DB OV
Cao M, et al. (2002): AR
yoaF yoaF 2026656..2026694 None AATAATGAAACCCGGAGTATGCCAAGCCCGTATAACATA Cao M, et al. (2002): ROMA AR RG
Cao M, et al. (2002): AR
yoaG yoaG 2027880..2027918 None ATTTTTGAAACCTTTTATTAGCGCATTGCGTATAGCACG Cao M, et al. (2002): ROMA AR RG
Cao M, et al. (2002): AR
yobJ yobJ 2070322..2070364 -39:+4 TTATATGAAACCTTTTTTATTTTAGCCCGTATTAAAAGTAAAT Huang X, et al. (1999): S1
Cao M, et al. (2002): AR
yozO yozO 2099171..2099209 None AATATTGAAACTTTTTTCTCTATATGTGCGTATTACTTG Cao M, et al. (2002): HM AR DB
Cao M, et al. (2002): AR
yqeZ-yqfA-yqfB yqeZ 2619051..2619089 None AAAAATGAAACCTTTGATACATTTGTTACGTATGAAGAG Cao M, et al. (2002): ROMA AR RG
Cao M, et al. (2002): AR
yqjL yqjL 2476093..2476130 None TTAGAGAAACGATCGGCTAAGGTTCTCCGTCTCCCTAG Cao M, et al. (2002): RO
Cao M, et al. (2002): AR
yrhH yrhH 2777728..2777772 -39:+6 TCTATTGAAACATTTTTCAATACATTGCCGTCTAGTTGGTACCTT Huang X & Helmann JD (1998): DB RG
Huang X, et al. (1998): RO
Cao M, et al. (2002): AR
ysdB ysdB 2950493..2950535 -39:+4 AAAAGTGAAACCTTTTTCTATGCTTTTCGTATTACATCAGATC Huang X, et al. (1999): S1
Cao M, et al. (2002): AR
ythPQ ythP 3071176..3071213 None GTTAAAGAAACTTTTTTTATTCTATTTCGTAGTAAATT Cao M, et al. (2002): ROMA AR RG
Cao M, et al. (2002): AR
yuaFGI yuaF 3181621..3181663 -39:+4 AATTTTGAAACTTTTCCCGAGGTGTCTCGTATAAATGGTAACG Huang X, et al. (1999): S1
Cao M, et al. (2002): AR
yvlABCD yvlA 3607855..3607897 -38:+5 GAATTTGAAACCTGAAGAGATTTTAAACGTATAAATAAGTAAA Huang X, et al. (1999): S1
Cao M, et al. (2002): AR
ywaC ywaC 3949642..3949683 -39:+3 ATTCATAGAACCTTGCAGCAGACAGGGACGTCTAGTACATGG Cao M, et al. (2002): ROMA AR RG PE RO
ywbLMN ywbN 3927055..3927099 -39:+6 AAATACAAAACAAATGATCAGTCCTATACGTCTTATGATAAATTA Huang X, et al. (1998): RO
Cao M, et al. (2002): ROMA AR RG PE
ywnJ ywnJ 3758641..3758693 -44:+9 TTTTTTTCTGTTACTTTTTGCTTTGTTTTACCGTCTATGTAGTTACATGTAGG Cao M, et al. (2002): AR
Cao M & Helmann JD (2004): RO PE
ywrE ywrE 3717765..3717807 -39:+4 TTTTATGAAACGTTTTTCCTTTTTCTTCGTATAAAGGTAGATT Huang X, et al. (1999): S1
Cao M, et al. (2002): AR
yxjJI yxjI 3996173..3996215 -40:+3 GAGCCTGAAACCTTTTCGCCACCTATCCGTAATTTCATACAAG Huang X, et al. (1999): S1
Cao M, et al. (2002): AR
yxzE yxzE 3981927..3981969 -39:+4 TGAAATGAAACCGGTCAGCGTTTCATCCGTATAACAGATATGG Huang X, et al. (1999): S1




Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai