Regulated Operon: rapI-phrI

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
rapI yddL + 546867..548042 response regulator aspartate phosphatase COG0457  
phrI
+ 547999..548118 regulator of the activity of phosphatase RapI
 

Operon evidence: Primer extension of phrI; genome analysis
Reference: McQuade RS, et al. (2001), Genbank AB001488
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -37:+5 547830..547899 AAGAATGCATTTTCATATCTGGCTTCGAGAAAAATGTTTGCTGATGTTGAAAATTTTTCGATTGAAGTCG McQuade RS, et al. (2001): PE RG
SigH Promoter -40:+2 547916..547957 ACAAGGAAATTTAATGCTCTCTAATGAATATTATCGTATGAG McQuade RS, et al. (2001): PE RG DB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAAGCTTAATCTTTTTTCGAAGGTTAAGCTTTTTCTTTTATTTA
     >>>>>>>>>>>    <<<<<<<<<<<
548146..548171
28..53
-13.1
phrI

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai