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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | rapI-phrI |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| rapI | yddL | + | 546867..548042 | response regulator aspartate phosphatase | COG0457 | |
| phrI | + | 547999..548118 | regulator of the activity of phosphatase RapI |
| Operon evidence: | Primer extension of phrI; genome analysis |
|---|---|
| Reference: | McQuade RS, et al. (2001), Genbank AB001488 |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -37:+5 | 547830..547899 | AAGAATGCATTTTCATATCTGGCTTCGAGAAAAATGTTTGCTGATGTTGAAAATTTTTCGATTGAAGTCG |
McQuade RS, et al. (2001): PE RG |
| SigH | Promoter | -40:+2 | 547916..547957 | ACAAGGAAATTTAATGCTCTCTAATGAATATTATCGTATGAG |
McQuade RS, et al. (2001): PE RG DB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGCTTAATCTTTTTTCGAAGGTTAAGCTTTTTCTTTTATTTA >>>>>>>>>>> <<<<<<<<<<< |
phrI |
|