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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | rpsD |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| rpsD | + | 3034772..3035374 | ribosomal protein S4 (BS4) | COG0522 | rpsD-BAC rpsD-CLO rpsD-STA |
| Operon evidence: | Northern blotting (0.8 kb transcript) |
|---|---|
| Reference: | Grundy FJ & Henkin TM (1990) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -47:+17 | 3034543..3034606 | TGGAGGAATGGTTGACTTCAAAACAAATAAATTATATAATGACCTTTGTGTGAAATATTGCAGC |
Grundy FJ, et al. (1990): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAACCCCTGCCGCTATGCGGTCGGGGTTTTTTTATCGGCTT >>>>>>>>>> <<<<<<<<<< |
rpsD |
|