Regulated Operon: rrnA-16S-trnA-Ile-trnA-Ala-rrnA-23S-rrnA-5S

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
rrnA-16S
+ 30277..31829 ribosomal RNA-16S
 
trnA-Ile
+ 31930..32006 transfer RNA-Ile
 
trnA-Ala
+ 32018..32093 transfer RNA-Ala
 
rrnA-23S
+ 32175..35102 ribosomal RNA-23S
 
rrnA-5S
+ 35235..35346 ribosomal RNA-5S
 

Operon evidence: Genome analysis
Reference: Ogasawara N, et al. (1983)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -46:+21 30037..30103 ATATTATGTATTGACTTAGACAACTGAAGGTGTTATTCTAATATACGTCGCTGATGACGAACAGCTT Ogasawara N, et al. (1983): S1
SigA Promoter -45:+14 30121..30179 TAAAAAGTTGTTGACAGTAGCGGCGGTAAATGTTATGATAATAAAGTCGCTTAAACGAG Ogasawara N, et al. (1983): S1

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
TTAAACCCAGCTTAATGAGCTGGGTTTTTTGTTTACTCA
     >>>>>>>>   <<<<<<<<
35360..35378
14..32
-14.2
 rrnA-5S

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai