Regulated Operon: rrnO-16S-trnO-Ile-trnO-Ala-rrnO-23S-rrnO-5S

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
rrnO-16S
+ 9809..11361 ribosomal RNA-16S
 
trnO-Ile
+ 11462..11538 transfer RNA-Ile
 
trnO-Ala
+ 11550..11625 transfer RNA-Ala
 
rrnO-23S
+ 11707..14634 ribosomal RNA-23S
 
rrnO-5S
+ 14690..14801 ribosomal RNA-5S
 

Operon evidence: agrees with ribosomal RNA 5' sequence
Reference: Ogasawara N, et al. (1983), Sogin ML & Pace NR (1976)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -46:+17 9493..9555 TGTCATAACCCTTTACAGTCATAAAAATTATGGTATAATCATTTCTGTTGTCTTTTTAAAGAC Ogasawara N, et al. (1983): S1
SigA Promoter -45:+18 9591..9653 CAAAAAAGTATTGACCTAGTTAACTAAAAATGTTACTATTAAGTAGTCGCTTTGAGAGAAGCA Ogasawara N, et al. (1983): S1

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
TTAAACCCAGCTCAATGAGCTGGGTTTTTTGTTTGTTAA
     >>>>>>>>   <<<<<<<<
14815..14833
14..32
-15.7
 rrnO-5S

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai