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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | sigI-rsgI |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| sigI | ykoZ | + | 1411200..1411955 | RNA polymerase sigma factor | COG1191 | |
| ykrI | rsgI | + | 1411952..1413097 |
| Operon evidence: | Northern blotting (1.5 kb transcript) |
|---|---|
| Reference: | Asai K, et al. (2007) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigI | Promoter | -47:+7 | 1411037..1411090 | CGCATAAAACCCCCTTAATTCTTTAGAAAGGCACGAAATCATGTATAGAACGTC |
Zuber U, et al. (2001): DB PE Asai K, et al. (2007): DB RG PE DP NB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CCGGGGTGGCGCAGACTATAGAATGTCTGCTGTCATTTTATGTGCGGTTG >>>>>>>>>> <<<<<<<<<<< |
ykrI |
|