Regulated Operon: sigI-rsgI

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
sigI ykoZ + 1411200..1411955 RNA polymerase sigma factor COG1191  
ykrI rsgI + 1411952..1413097

 

Operon evidence: Northern blotting (1.5 kb transcript)
Reference: Asai K, et al. (2007)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigI Promoter -47:+7 1411037..1411090 CGCATAAAACCCCCTTAATTCTTTAGAAAGGCACGAAATCATGTATAGAACGTC Zuber U, et al. (2001): DB PE
Asai K, et al. (2007): DB RG PE DP NB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
CCGGGGTGGCGCAGACTATAGAATGTCTGCTGTCATTTTATGTGCGGTTG
      >>>>>>>>>>        <<<<<<<<<<<
1413424..1413452
327..355
-14.4
ykrI

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai