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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | sigM-yhdLK |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| sigM | yhdM | - | 1028885..1029376 | RNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma-M) | COG1595 | sigM-BAC |
| yhdL | - | 1027819..1028895 | ||||
| yhdK | - | 1027541..1027831 |
| Operon evidence: | Northern blotting (1.9 kb transcript) |
|---|---|
| Reference: | Horsburgh MJ & Moir A (1999), Horsburgh MJ, et al. (2001), Genbank Y14082 |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -42:+4 | 1029467..1029513 | CTCCGCACTATCTTTTGCGGCCATTTTTGGGTACTATATAGTAATGG |
Horsburgh MJ & Moir A (1999): PE NB RG |
| SigM | Promoter | -39:+4 | 1029391..1029434 | GTAATGTGCAACTTTAAACCTTTCTTATGCGTGTATAACATAGA |
Horsburgh MJ & Moir A (1999): PE DB NB RG Cao M, et al. (2002): AR |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGACGCCTTTTCAGGCGTCTTTTTTCGTTATACC >>>>>>> <<<<<<< |
yhdK |
|