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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | splAB |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| splA | ykxI | + | 1460762..1461001 | transcriptional regulator | ||
| splB | spl | + | 1461079..1462107 | spore photoproduct (thymine dimer) lyase | COG1533 |
| Operon evidence: | 5' primer extension of splB |
|---|---|
| Reference: | Fajardo-Cavazos P, et al. (1993), Fajardo-Cavazos P & Nicholson WL (2000), Pedraza-Reyes M, et al. (1994) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigG | Promoter | -40:+4 | 1460706..1460749 | TTTTTTTCATAAGTAAGGGTATAGAAGGACACAATAACATGGCT |
Pedraza-Reyes M, et al. (1994): RG DB OV PE RO Pedraza-Reyes M, et al. (1997): SDM RG |
| SplA | Negative | ND | ND | ND |
Pedraza-Reyes M, et al. (1997): DB RG Fajardo-Cavazos P & Nicholson WL (2000): DB RG DP OV |
| SigG | Promoter | -41:+4 | 1461014..1461058 | TACAACTCATATCCTTTCCGCCTAGTGAGAAAAGTAACGTTAGTA |
Pedraza-Reyes M, et al. (1994): RG DB OV PE Pedraza-Reyes M, et al. (1997): DB RG OV |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TTAAACGGGCTGTTGTGATCAACAGCTCGCTTTTTTATAAAAAAC >>>>>>>>>> <<<<<<<<<< |
splB |
|