Regulated Operon: splAB

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
splA ykxI + 1460762..1461001 transcriptional regulator
 
splB spl + 1461079..1462107 spore photoproduct (thymine dimer) lyase COG1533  

Operon evidence: 5' primer extension of splB
Reference: Fajardo-Cavazos P, et al. (1993), Fajardo-Cavazos P & Nicholson WL (2000), Pedraza-Reyes M, et al. (1994)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigG Promoter -40:+4 1460706..1460749 TTTTTTTCATAAGTAAGGGTATAGAAGGACACAATAACATGGCT Pedraza-Reyes M, et al. (1994): RG DB OV PE RO
Pedraza-Reyes M, et al. (1997): SDM RG
SplA Negative ND ND ND Pedraza-Reyes M, et al. (1997): DB RG
Fajardo-Cavazos P & Nicholson WL (2000): DB RG DP OV
SigG Promoter -41:+4 1461014..1461058 TACAACTCATATCCTTTCCGCCTAGTGAGAAAAGTAACGTTAGTA Pedraza-Reyes M, et al. (1994): RG DB OV PE
Pedraza-Reyes M, et al. (1997): DB RG OV

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
TTAAACGGGCTGTTGTGATCAACAGCTCGCTTTTTTATAAAAAAC
     >>>>>>>>>>    <<<<<<<<<<
1462109..1462132
2..25
-16.9
splB

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai