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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | sps |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| spsA | ipa-63d | - | 3891368..3892138 | COG0463 | ||
| spsB | ipa-64d | - | 3889945..3891363 | COG1887 | spsB-STA | |
| spsC | ipa-65d | - | 3888755..3889924 | COG0399 | ||
| spsD | ipa-66d | - | 3887885..3888754 | COG0456 | ||
| spsE | ipa-67d | - | 3886764..3887885 | COG2089 | ||
| spsF | ipa-68d | - | 3886052..3886771 | COG1861 | ||
| spsG | ipa-69d, spsH | - | 3885026..3886045 | COG3980 | ||
| spsI | ipa-71d | - | 3884261..3885001 | COG1209 | ||
| spsJ | ipa-72d | - | 3883314..3884261 | COG1088 | rfbB-BAC | |
| spsK | ipa-73d | - | 3882449..3883300 | |||
| spsL | ipa-73d | - | 3882001..3882456 |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Glaser P, et al. (1993), Presecan E, et al. (1997) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigK | Promoter | -39:+5 | 3892172..3892215 | CCTAGCGCAACTTGAGCATAAGCAACATAAGATAACGATAGTTT |
Eichenberger P, et al. (2004): Race-PCR |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AACGTGATCAATCGAAGAGCAGAGGCATCTTCGACTTTTTTTGCCCTTTT >>>>>>>>> <<<<<<<<<< |
spsL |
|