Regulated Operon: ssuBACD-ygaN

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
ssuB ygaL + 960686..961498 aliphatic sulfonate ABC transporter (binding protein)
ssuB-BAC  
ssuA ygbA, yzeA + 961516..962514 aliphatic sulfonate ABC transporter (binding lipoprotein) COG0715 ssuA-BAC  
ssuC ygaM, yzeB + 962511..963341 aliphatic sulfonate ABC transporter (permease) COG0600 ssuC-BAC  
ssuD ygcA, yzeC + 963364..964494 aliphatic sulfonate monooxygenase
ssuD-BAC  
ygaN
+ 964598..965134

 

Operon evidence: Northern blot (4.7 kb and 4.0 kb transcripts)
Reference: Van der Ploeg JR, et al. (2001)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -47:+15 960560..960621 ATTTAAAAAAGAGTTGACATATCGGAATAATTTGAATTAACATGTTATTCAAACAAAAAAAC Van der Ploeg JR, et al. (2001): PE
YjbD Negative ND ND ND Erwin KN, et al. (2005): RG DB
YrzC Negative -60:-1 960547..960606 TATCAAAAATCGTATTTAAAAAAGAGTTGACATATCGGAATAATTTGAATTAACATGTTA Even S, et al. (2006): GS HM AR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
GTTTAACTAAAATACAGCCCCCCGAACATGGTATGATATTCAAAAAAAGGGGGCTTTTTTTCTGAAAACA
               >>>>>>>>>>>>>>>>        <<<<<<<<<<<<<<<<
964510..964549
16..55
-14.3
 ssuD
CATTAGAATGGGCGGCTTCAGGCCGTCTGTTTTACAAAGCGGTA
         >>>>>>>>   <<<<<<<<
965138..965156
4..22
-15.4
 ygaN

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai