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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | trnB |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| rrnB-16S | - | 3176132..3177681 | ribosomal RNA-16S | |||
| rrnB-23S | - | 3173037..3175963 | ribosomal RNA-23S | |||
| rrnB-5S | - | 3172866..3172981 | ribosomal RNA-5S | |||
| trnB-Val | trnE | - | 3172769..3172844 | transfer RNA-Val | ||
| trnB-Thr | trnE | - | 3172661..3172736 | transfer RNA-Thr | ||
| trnB-Lys | trnE | - | 3172548..3172623 | transfer RNA-Lys | ||
| trnB-Leu1 | trnE | - | 3172451..3172537 | transfer RNA-Leu | ||
| trnB-Gly1 | trnE | - | 3172371..3172445 | transfer RNA-Gly | ||
| trnB-Leu2 | trnE | - | 3172268..3172356 | transfer RNA-Leu | ||
| trnB-Arg | trnE | - | 3172185..3172261 | transfer RNA-Arg | ||
| trnB-Pro | trnE | - | 3172093..3172169 | transfer RNA-Pro | ||
| trnB-Ala | trnE | - | 3172012..3172087 | transfer RNA-Ala | ||
| trnB-Met1 | trnE | - | 3171918..3171994 | transfer RNA-Met | ||
| trnB-Met3 | trnB-Ile1, trnE | - | 3171839..3171915 | transfer RNA-Met | ||
| trnB-Ser1 | trnE | - | 3171741..3171832 | transfer RNA-Ser | ||
| trnB-Met2 | trnE | - | 3171647..3171723 | transfer RNA-Met | ||
| trnB-Asp | trnE | - | 3171559..3171635 | transfer RNA-Asp | ||
| trnB-Phe | trnE | - | 3171471..3171546 | transfer RNA-Phe | ||
| trnB-His | trnE | - | 3171378..3171453 | transfer RNA-His | ||
| trnB-Gly2 | trnE | - | 3171294..3171367 | transfer RNA-Gly | ||
| trnB-Ile2 | trnE | - | 3171202..3171278 | transfer RNA-Ile | ||
| trnB-Asn | trnE | - | 3171117..3171191 | transfer RNA-Asn | ||
| trnB-Ser2 | trnE | - | 3171023..3171113 | transfer RNA-Ser | ||
| trnB-Glu | trnE | - | 3170923..3170997 | transfer RNA-Glu |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Green CJ, et al. (1985) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -48:+17 | 3177931..3177995 | TTTAAAAAACTATTGCAATAAATAAATACAGGTGTTATATTATTAAACGTCGCTGATGCACAGCG |
Stewart GC, et al. (1983): S1 Estrem ST, et al. (1999): ND |
| SigA | Promoter | -43:+20 | 3177838..3177900 | AAAAAAGTTGTTGACAAAAAAGAAGCTGAATGTTATATTAGTAAAGCTGCTTCATTGAGAAGT |
Stewart GC, et al. (1983): S1 |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AGAAGCCTTGCATATCCTGCAAGGTTTTTTTGTTTTTAT >>>>>>> <<<<<<< |
trnB-Glu | |||
| GTATAAGCGCTTTCAGGAAAGGGCTTTTTTTTATTTCTTC >>>>>>>> <<<<<<< |
trnB-Glu |
|