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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | veg |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| veg | + | 52761..53021 | COG4466 | x0312-BAC x0312-STA |
| Operon evidence: | Northern blotting (0.3 kb transcript) |
|---|---|
| Reference: | Fukushima T, et al. (2003), BSORF |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -44:+18 | 52702..52763 | AAATTTTATTTGACAAAAATGGGCTCGTGTTGTACAATAAATGTAGTGAGGTGGATGCAATG |
Whipple FW, et al. (1992): RO FT Le Grice SF & Sonenshein AL (1982): FT NB Moran CP Jr, et al. (1982): RO, in-vitro transcription Fukushima T, et al. (2003): PE NB RG |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AACGGGCAGTGAACCTTTTGTTTACTGCTTTTTGTTTTGCCCT >>>>>>>>> <<<<<<<<< |
veg |
|