Regulated Operon: xkdBCD-xtrA

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
xkdB ykxB + 1321325..1322158

 
xkdC ykxC + 1322058..1322858
COG1484  
xkdD ykxD + 1323110..1323460

 
xtrA
+ 1323457..1323663

 

Operon evidence: Genome analysis
Reference: McDonnell GE, et al. (1994)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
Xre Negative ND 1321082..1321105 GATGATACAGAATGTATCGTTTAT McDonnell GE, et al. (1994): GS FT
Xre Negative ND 1321115..1321142 CATCCGATACAAAATGTATCAAAAAAGA McDonnell GE, et al. (1994): GS FT

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
GCCTGCGGACACTGATCAACTGCACAGCATTTGTGCGTTGATTGGTGTCCGTTTTTTATTTGCCAA
     >>>>>>>>>>>>>>>>>>>>>     <<<<<<<<<<<<<<<<<<<<
1323699..1323744
36..81
-34.7
 xtrA

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai