Regulated Operon: xynA

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
xynA
- 2053809..2054450 endo-1,4-beta-xylanase
 

Operon evidence: Northern blotting (1.0 kb transcript)
Reference: Allmansberger R (1996), Genbank Z34519
Comments: The terminator suggested in Genbank Z34519 does not agree well with the measured mRNA length.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -49:+11 2054538..2054597 ATTACAAATACTTTTAATATTTGCTCATGAATTCGTGGTATTATACTGAAGGGGACGATC Allmansberger R (1996): PE NB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
TAATAGAATGGTATTTAAATGAGAATGCTATCAATTTTTTGTAGTCAGC
     >>>>>>>>>>>      <<<<<<<<<<
2053598..2053624
185..211
-9.2
xynA

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai