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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | xynA |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| xynA | - | 2053809..2054450 | endo-1,4-beta-xylanase |
| Operon evidence: | Northern blotting (1.0 kb transcript) |
|---|---|
| Reference: | Allmansberger R (1996), Genbank Z34519 |
| Comments: | The terminator suggested in Genbank Z34519 does not agree well with the measured mRNA length. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -49:+11 | 2054538..2054597 | ATTACAAATACTTTTAATATTTGCTCATGAATTCGTGGTATTATACTGAAGGGGACGATC |
Allmansberger R (1996): PE NB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TAATAGAATGGTATTTAAATGAGAATGCTATCAATTTTTTGTAGTCAGC >>>>>>>>>>> <<<<<<<<<< |
xynA |
|