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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | yaaA-recF-yaaB-gyrB |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| yaaA | + | 3206..3421 | COG2501 | yaaA-BAC | ||
| recF | + | 3437..4549 | COG1195 | recF-BAC | ||
| yaaB | + | 4567..4725 | ||||
| gyrB | novA | + | 4866..6782 | DNA gyrase (subunit B) | COG0187 | parE-BAC-1 parE-STR |
| Operon evidence: | S1 nuclease experiments; transcriptional and expression experiments |
|---|---|
| Reference: | Ogasawara N, et al. (1985), Moriya S, et al. (1985) |
| Comments: | Internal promoter inside recF. Northern blotting results in BSORF show various transcripts in this region. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -41:+11 | 3139..3190 | CCCTTTCCCTAATTCGTTTTTTTTTAGTACAATTAGATATTAGTGATATTTG |
Ogasawara N, et al. (1985): S1 |
| SigA | Promoter | -51:+19 | 3599..3668 | TCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAA |
Ogasawara N, et al. (1985): S1 |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGCCTTATTTCCAATAAGAAATAAGGCTTTTTTCTGAACAAG >>>>>>>>>> <<<<<<<<<< |
gyrB |
|