Regulated Operon: yaaA-recF-yaaB-gyrB

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
yaaA
+ 3206..3421
COG2501 yaaA-BAC  
recF
+ 3437..4549
COG1195 recF-BAC  
yaaB
+ 4567..4725

 
gyrB novA + 4866..6782 DNA gyrase (subunit B) COG0187 parE-BAC-1 parE-STR  

Operon evidence: S1 nuclease experiments; transcriptional and expression experiments
Reference: Ogasawara N, et al. (1985), Moriya S, et al. (1985)
Comments: Internal promoter inside recF. Northern blotting results in BSORF show various transcripts in this region.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -41:+11 3139..3190 CCCTTTCCCTAATTCGTTTTTTTTTAGTACAATTAGATATTAGTGATATTTG Ogasawara N, et al. (1985): S1
SigA Promoter -51:+19 3599..3668 TCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAA Ogasawara N, et al. (1985): S1

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAAGCCTTATTTCCAATAAGAAATAAGGCTTTTTTCTGAACAAG
     >>>>>>>>>>      <<<<<<<<<<
6792..6817
10..35
-14.4
gyrB

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai