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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | yhdNO |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| yhdN | + | 1029573..1030568 | COG0667 | |||
| yhdO | + | 1030703..1031302 | COG0204 |
| Operon evidence: | Northern blotting (1.8 kb transcript) |
|---|---|
| Reference: | Petersohn A, et al. (1999), Genbank Y14082 |
| Comments: | The readthrough terminator downstream of yhdN leads to a 1.2 kb transcript. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigB | Promoter | ND | 1029515..1029554 | AAGGTTTAACATTTTTTCCAGAGGGGAAAAGATAGTGAAA |
Petersohn A, et al. (1999): NB 2D-gel HB |
| YlpC | Negative | ND | 1030590..1030651 | CAGCTTTTTGGCGTTTAAACGAGAGAAATCTTAAAAATTAGTACCAGGTAATAAAAAATATT |
Schujman GE, et al. (2003): DB AR RG GS, immunoblotting |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| GAAAAGCACCCTATACAAGGTGCTTTTCTTATTATGCT >>>>> <<<<< |
yhdO | |||
| CAAAAGCTGAGGGCGAATCCTCAGCTTTTTGGCGTTTAAA >>>>>>>> <<<<<<<< |
yhdN |
|