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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | yhfL |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| yhfL | + | 1100284..1101825 | COG0318 | x0851-BAC |
| Operon evidence: | Northern blotting (1.7 kb transcript) |
|---|---|
| Reference: | Matsuoka H, et al. (2006) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| YsiA | Negative | -38:+44 | 1100192..1100273 | GCTCTTGAGTGTTTTTTTCTGTTTCTCTATAATGGAGAAGAAAGCTTGGCTTCAATAATGAATGACTATTCATTCACTTAAG |
Matsuoka H, et al. (2006): NB DB PE GS FT RG |
| SigA | Promoter | -38:+44 | 1100192..1100273 | GCTCTTGAGTGTTTTTTTCTGTTTCTCTATAATGGAGAAGAAAGCTTGGCTTCAATAATGAATGACTATTCATTCACTTAAG |
Matsuoka H, et al. (2006): PE NB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AATAAAATGAAAAAGCGAAGCGGTTAGCTTCGCTTTTTCATTTTCAAT >>>>>>> <<<<<<< |
yhfL |
|