Regulated Operon: ykuFG

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
ykuF
+ 1477376..1478140
COG1028  
ykuG
+ 1478441..1480723
COG3409  

Operon evidence: Northern blotting (3.5 kb transcript)
Reference: Matsuoka H, et al. (2006)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
YsiA Negative -36:+27 1477302..1477364 TGTGCTGACAGAGGCAGGGATATAATGATAGAATATTATTGAATGAATAATCATTCACAATTG Matsuoka H, et al. (2006): NB DB PE GS FT RG
SigA Promoter -36:+27 1477302..1477364 TGTGCTGACAGAGGCAGGGATATAATGATAGAATATTATTGAATGAATAATCATTCACAATTG Matsuoka H, et al. (2006): PE NB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
GAATAAACTGCAAAACAAGCGAACGTTAAAACTGGTCGTTCGCTTGTTTTATTTTCTATTT
               >>>>>>>>>>>>>    <<<<<<<<<<<<<<
1480767..1480797
44..74
-16.9
 ykuG

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai