Regulated Operon: ylaABCD

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
ylaA
+ 1541193..1543133

 
ylaB
+ 1543123..1543392

 
ylaC
+ 1543392..1543913
COG1595  
ylaD
+ 1543910..1544203

 

Operon evidence: Northern blotting (3.0 kb transcript)
Reference: Horsburgh MJ, et al. (2001), Matsumoto T, et al. (2005)
Comments: Horsburgh et al. measured a 2.0 kb transcript.

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
YlaC Promoter -45:+10 1541124..1541178 TGTTTCATCTTGAAACTTTTTGAAAAGTCCGCTGTCTAACCGAATGAGGCCTTAA Matsumoto T, et al. (2005): DB NB PE RACE-PCR
Asai K, et al. (2003): AR
SigA Promoter -41:+10 1543353..1543403 TTTATTGGCCATTTGGATGACGGTGTGGTTTTATTTTTAATGAAGCATAGG Matsumoto T, et al. (2005): NB PE RACE-PCR
YjbD Positive ND ND ND Matsumoto T, et al. (2005): DB NB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
AAACTGCTGATATAAAAAAAGCGCTTGTCCGATTCCGGCAAGCGCTTTTTTACATTAAGC
                    >>>>>>>>>>>    <<<<<<<<<<
1544209..1544233
6..30
-17.8
 ylaD

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai