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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | yndDEF |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| yndD | + | 1906703..1908265 | yndD-BAC | |||
| yndE | + | 1908295..1909386 | ||||
| yndF | + | 1909376..1910590 |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Wang S, et al. (2006) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigG | Promoter | -38:+8 | 1906522..1906567 | ACGAACATAAAAAATAGGTATACGGGAAAAATAATCCTATTAGAGA |
Wang S, et al. (2006): AR, Race-PCR |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| GAATCCCAAGGAAGAGAAGGAAACCTCTCTTCTCTTTTTTATGCATTTA >>>>>>>>>>> <<<<<<<<<< |
yndF |
|