Regulated Operon: yndN

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
yndN fosB + 1915872..1916306
COG0346 x0903-BAC  

Operon evidence: upstream and downstream gene are on the opposite strand
Reference: Cao M, et al. (2001)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigW Promoter -41:+4 1915804..1915848 CTGTATGAAACTTTCTTATGAAAAAAGTCGTATATGTGGATGATC Cao M, et al. (2001): PE RG DB OV
Cao M, et al. (2002): AR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
CTATTCGGGCTCGCACCCAAAAGTCAGGGCGAGCCTGCTTTTTTTGAACAACA
     >>>>>>>>>>>>         <<<<<<<<<<<
1916743..1916774
437..468
-20.9
yndN

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai