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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | yqfSU |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| yqfS | nfo | - | 2592514..2593407 | COG0648 | ||
| yqfU | - | 2591236..2592117 | COG1284 | x0569-BAC yqfU-BAC |
| Operon evidence: | Northern blotting (2.3 kb transcript) |
|---|---|
| Reference: | Urtiz-Estrada N, et al. (2003) |
| Comments: | The gene yqfT is located between yqfS and yqfU, but is transcribed in the opposite direction. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigG | Promoter | -40:+5 | 2593458..2593502 | AGCCTGGGTATAAAAAGAAAATGAGCTATGAGATGGAGAAAATCA |
Urtiz-Estrada N, et al. (2003): PE NB RT-PCR |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| GAAAATGGCTTGCTGGACAGACAGCTGCCATTTTCTTTTTCATAC >>>>>>>>>> <<<<<<<<< |
yqfU |
|