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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | yrrT-mtn-yrhABC |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| yrrT | - | 2787073..2787714 | COG0500 | |||
| mtn | yrrU, mtnN | - | 2786357..2787052 | methylthioadenosine nucleosidase | COG0775 | mtn-BAC pfs-STA |
| yrhA | - | 2785369..2786292 | COG0031 | yrhA-BAC | ||
| yrhB | - | 2784228..2785367 | COG0626 | |||
| yrhC | - | 2783915..2784145 |
| Operon evidence: | Northern blotting (3.9kb transcript) |
|---|---|
| Reference: | Hullo MF, et al. (2007) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -59:+10 | 2787764..2787832 | ATAAAATACACAAAGTGTTTTAGTACCTGCTTTTCAGAATATGTGGTATTATAGGAACTGTTCCATCAT |
Auger S (2003): Thesis: PE Even S, et al. (2006): PE |
| YrzC | Negative | +1:+50 | 2787724..2787773 | GTTCCATCATTAATCCATAGTATACTTATAGGAATTATTAAATATGGAGT |
Even S, et al. (2006): GS AR RG DP Choi SY, et al. (2006): FT Leelakriangsak M, et al. (2007): FT |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| GAAGAAGCCGACGAATAAAAAAACAGCCATCATCAGAGATGGCTGTTTTTCTGTTATTGT >>>>>>>> <<<<<<<< |
yrhC |
|