Regulated Operon: ytkD

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
ytkD
- 3134031..3134507
COG0494  

Operon evidence: Genome analysis
Reference: Lapidus A, et al. (1997)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -40:+5 3134535..3134579 AAAGGCTTCCGAAGAAACGTAACTGTGGTATGATGTATGGAAGAT Ramirez MI, et al. (2004): PE NB RT-PCR
SigF Promoter -45:+7 3134582..3134633 GCTAGTCTGCATGCAGAACCTGACGGCGTGCTGGGTTTCCCTTATTTTTTGA Ramirez MI, et al. (2004): PE NB RT-PCR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAACCCGGCACATGTGCCGGGTTTTTTATGTCCTCC
     >>>>>>>    <<<<<<<
3134009..3134026
5..22
-14.6
ytkD

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai