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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | ytkD |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| ytkD | - | 3134031..3134507 | COG0494 |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Lapidus A, et al. (1997) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -40:+5 | 3134535..3134579 | AAAGGCTTCCGAAGAAACGTAACTGTGGTATGATGTATGGAAGAT |
Ramirez MI, et al. (2004): PE NB RT-PCR |
| SigF | Promoter | -45:+7 | 3134582..3134633 | GCTAGTCTGCATGCAGAACCTGACGGCGTGCTGGGTTTCCCTTATTTTTTGA |
Ramirez MI, et al. (2004): PE NB RT-PCR |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAACCCGGCACATGTGCCGGGTTTTTTATGTCCTCC >>>>>>> <<<<<<< |
ytkD |
|