Regulated Operon: ytlABCD

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
ytlA
+ 3131419..3132108
COG0715 x0622-BAC  
ytlB
+ 3132105..3132422
COG0715  
ytlC
+ 3132435..3133217
COG1116 ytlC-BAC  
ytlD
+ 3133192..3134004
COG0600  

Operon evidence: Genome analysis; downstream genes are on the opposite strand
Reference: Genbank AF008220, Lapidus A, et al. (1997)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigK Promoter -36:+8 3131335..3131378 GCATTCACACATTTTTATACCCATCATACGATATGTAAAGCAAA Eichenberger P, et al. (2004): Race-PCR

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
TGGACGAAGGGGAGGACATAAAAAACCCGGCACATGTGCCGGGTTTTTTATTCAATCC
                         >>>>>>>    <<<<<<<
3134009..3134026
5..22
-14.6
ytlD

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai