Regulated Operon: | ytxGHJ |
Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
---|---|---|---|---|---|---|
ytxG | csb40 | - | 3046634..3047065 | COG4768 | ||
ytxH | csb40 | - | 3046148..3046606 | COG4980 | ||
ytxJ | csb40 | - | 3045798..3046124 |
Operon evidence: | Northern blotting (1.3 kb transcript) |
---|---|
Reference: | Varon D, et al. (1996), Eymann C, et al. (2001) |
Comments: |
Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
---|---|---|---|---|---|
SigB | Promoter | -41:+5 | 3047087..3047132 | AGTACACATGTTTATGATTGAAGAAAACGGGTAAACAGCAGTATAT |
Varon D, et al. (1996): PE DB RG, plasmid integration |
SigH | Promoter | -45:+5 | 3047136..3047185 | AAAGCTTATTAAAGGATTTTCTTACATAACGGAGAATAGTATGTATACAG |
Varon D, et al. (1996): PE DB RG, plasmid integration |
Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
---|---|---|---|---|
AAAAAGCGTCCAGATATCATCTGGCGCTTTTTTTTGTAAAAA >>>>>>>>>> <<<<<<<<< |
ytxJ |
|