Regulated Operon: ytxGHJ

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
ytxG csb40 - 3046634..3047065
COG4768  
ytxH csb40 - 3046148..3046606
COG4980  
ytxJ csb40 - 3045798..3046124

 

Operon evidence: Northern blotting (1.3 kb transcript)
Reference: Varon D, et al. (1996), Eymann C, et al. (2001)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigB Promoter -41:+5 3047087..3047132 AGTACACATGTTTATGATTGAAGAAAACGGGTAAACAGCAGTATAT Varon D, et al. (1996): PE DB RG, plasmid integration
SigH Promoter -45:+5 3047136..3047185 AAAGCTTATTAAAGGATTTTCTTACATAACGGAGAATAGTATGTATACAG Varon D, et al. (1996): PE DB RG, plasmid integration

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAAGCGTCCAGATATCATCTGGCGCTTTTTTTTGTAAAAA
     >>>>>>>>>>   <<<<<<<<<
3045770..3045791
7..28
-13.6
ytxJ

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai