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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | ytxGHJ |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| ytxG | csb40 | - | 3046634..3047065 | COG4768 | ||
| ytxH | csb40 | - | 3046148..3046606 | COG4980 | ||
| ytxJ | csb40 | - | 3045798..3046124 |
| Operon evidence: | Northern blotting (1.3 kb transcript) |
|---|---|
| Reference: | Varon D, et al. (1996), Eymann C, et al. (2001) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigB | Promoter | -41:+5 | 3047087..3047132 | AGTACACATGTTTATGATTGAAGAAAACGGGTAAACAGCAGTATAT |
Varon D, et al. (1996): PE DB RG, plasmid integration |
| SigH | Promoter | -45:+5 | 3047136..3047185 | AAAGCTTATTAAAGGATTTTCTTACATAACGGAGAATAGTATGTATACAG |
Varon D, et al. (1996): PE DB RG, plasmid integration |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGCGTCCAGATATCATCTGGCGCTTTTTTTTGTAAAAA >>>>>>>>>> <<<<<<<<< |
ytxJ |
|