Regulated Operon: yusMLKJ

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
yusM
- 3371767..3372675
COG0506 x1378-BAC  
yusL
- 3369052..3371499
COG1024 yusL-BAC  
yusK
- 3367866..3369041
COG0183  
yusJ
- 3366067..3367851
COG1960 yusJ-BAC  

Operon evidence: Northern blotting (7.0 kb transcript)
Reference: Matsuoka H, et al. (2006)
Comments: A yusLKJ transcript of 5.5 kb was also detected.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
YsiA Negative -38:+56 3371437..3371529 CTATTGAAGTCGAACCGGAAATCTTTTAAGATGAAAGAAGAAACGGGTTTCATTTTTTTTAGTCAAAAAATGAATGACTATTCATTCAATGTT Matsuoka H, et al. (2006): NB DB PE GS FT RG
SigA Promoter -38:+56 3371437..3371529 CTATTGAAGTCGAACCGGAAATCTTTTAAGATGAAAGAAGAAACGGGTTTCATTTTTTTTAGTCAAAAAATGAATGACTATTCATTCAATGTT Matsuoka H, et al. (2006): PE NB
YvbA Positive ND ND ND Gonzalez-Pastor JE, et al. (2003): RG DB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
TCTGATTGGCCATGAGCTCCGCATGCGCGGAGCTCTTTTTTAAGAAGCAC
             >>>>>>>>>    <<<<<<<<<
3366037..3366058
9..30
-20.0
yusJ

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai