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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | yusMLKJ |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| yusM | - | 3371767..3372675 | COG0506 | x1378-BAC | ||
| yusL | - | 3369052..3371499 | COG1024 | yusL-BAC | ||
| yusK | - | 3367866..3369041 | COG0183 | |||
| yusJ | - | 3366067..3367851 | COG1960 | yusJ-BAC |
| Operon evidence: | Northern blotting (7.0 kb transcript) |
|---|---|
| Reference: | Matsuoka H, et al. (2006) |
| Comments: | A yusLKJ transcript of 5.5 kb was also detected. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| YsiA | Negative | -38:+56 | 3371437..3371529 | CTATTGAAGTCGAACCGGAAATCTTTTAAGATGAAAGAAGAAACGGGTTTCATTTTTTTTAGTCAAAAAATGAATGACTATTCATTCAATGTT |
Matsuoka H, et al. (2006): NB DB PE GS FT RG |
| SigA | Promoter | -38:+56 | 3371437..3371529 | CTATTGAAGTCGAACCGGAAATCTTTTAAGATGAAAGAAGAAACGGGTTTCATTTTTTTTAGTCAAAAAATGAATGACTATTCATTCAATGTT |
Matsuoka H, et al. (2006): PE NB |
| YvbA | Positive | ND | ND | ND |
Gonzalez-Pastor JE, et al. (2003): RG DB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TCTGATTGGCCATGAGCTCCGCATGCGCGGAGCTCTTTTTTAAGAAGCAC >>>>>>>>> <<<<<<<<< |
yusJ |
|