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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | yvyD |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| yvyD | yviI | - | 3630033..3630602 | COG1544 |
| Operon evidence: | Northern blotting (0.6 kb transcript) |
|---|---|
| Reference: | Drzewiecki K, et al. (1998), Chen L & Helmann JD (1994) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigB | Promoter | -42:+7 | 3630632..3630680 | GATTTATGTTTCAGCAGGAATTGTAAAGGGTAAAAGAGAAATAGATACA |
Drzewiecki K, et al. (1998): PE NB DB Eymann C & Hecker M (2001): PE |
| SigH | Promoter | -39:+5 | 3630626..3630669 | CAGCAGGAATTGTAAAGGGTAAAAGAGAAATAGATACATATCCT |
Drzewiecki K, et al. (1998): PE NB DB Eymann C, et al. (2001): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AGAAGCCTTCCGTGATGTCCGCGGAAGGTTTTTGTTTTTCTTA >>>>>>>>> <<<<<<<<< |
yvyD |
|