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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | ywjF-acdA-rpoE |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| ywjF | - | 3813405..3815522 | COG0247 | ywjF-BAC | ||
| acdA | - | 3812269..3813408 | acyl-CoA dehydrogenase | COG1960 | x0639-BAC x0817-BAC | |
| rpoE | - | 3811565..3812086 | RNA polymerase (delta subunit) | COG3343 | rpoE-LAB rpoE-STA rpoE-STR |
| Operon evidence: | Northern blotting (4.2 kb transcript) |
|---|---|
| Reference: | Trach K, et al. (1988), Matsuoka H, et al. (2006) |
| Comments: | An internal promoter in front of rpoE leads to a 0.7 kb monocistronic rpoE transcript. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| YsiA | Negative | -37:+6 | 3815580..3815622 | TATTGACTGAACACTCATTCATTATTTATCATAAAGATAATCT |
Matsuoka H, et al. (2006): NB DB PE GS FT RG |
| SigA | Promoter | -37:+6 | 3815580..3815622 | TATTGACTGAACACTCATTCATTATTTATCATAAAGATAATCT |
Matsuoka H, et al. (2006): PE NB |
| SigA | Promoter | -52:+12 | 3812161..3812224 | ATTAACGCTGTTAAGGGTAGCATATTCTGTTTTATTTTGTTTATAATGAGAGGTATGGTTTGTA |
Lopez de Saro FJ, et al. (1999): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| GTTATGCTCCCTTTCAAGAAATTGAAAGGGAGCTTTCTTATTTTCACC >>>>>>>>>>>> <<<<<<<<<<<< |
rpoE |
|