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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | ywkAB |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| ywkA | maeA | - | 3799441..3801189 | COG0281 | ||
| ywkB | - | 3798400..3799359 | COG0679 |
| Operon evidence: | Northern blotting (2.8 kb transcript); genes further downstream are on the opposite strand |
|---|---|
| Reference: | Doan T, et al. (2003), Genbank Z49782 |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -49:+11 | 3801258..3801317 | GTAATTTTCTTCTCTTGAATTTTGATTTTGACAGGCATACAATAGCTTACGTAATGTAAA |
Doan T, et al. (2003): PE |
| YufM | Positive | -88:-30 | 3801298..3801360 | AATATTCAATTAAAAAATTTAAATAAGTATATTAAAAAATTAAGTAATTTTCTTCTCTTGAAT |
Doan T, et al. (2003): NB PE RG FT |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGCTCCCTTTAAGGGAGCTTTTTGCTTTAGGTT >>>>>>> <<<<<<< |
ywkB |
|