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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | ywmF-csbD |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| ywmF | - | 3769388..3769867 | ||||
| csbD | ywmG | - | 3769127..3769315 | sigma-B-controlled gene | COG3237 | csbD-STA |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Wray LV Jr, et al. (1997), Akbar S, et al. (1999) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigB | Promoter | ND | 3769337..3769390 | TAACATTAGAATGTTTATTGCCTCTCAGATCGGGAAGTTAACAAGTACACACAT |
Akbar S, et al. (1999): RG; binding site mutation |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| GAAGAGGCAGGAAACGAAATGTTTCTTGTCTTTTTTTTTCGCTTT >>>>>>>>>> <<<<<<<<<< |
csbD |
|