 |
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | ywoA |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| ywoA | bcrC | + | 3757569..3758150 | COG0671 |
| Operon evidence: | Northern blotting (0.6 kb transcript) |
|---|---|
| Reference: | Cao M & Helmann JD (2002), Presecan E, et al. (1997), Ohki R, et al. (2003) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigM | Promoter | -38:+6 | 3757506..3757549 | TTATTTGAAACTTTTCATGAGTAAGATTAGTCTACTAAATATAA |
Cao M & Helmann JD (2002): HB PE DB RG Cao M, et al. (2002): AR Ohki R, et al. (2003): NB RG DB Thackray PD, et al. (2003): RG |
| SigX | Promoter | -38:+6 | 3757506..3757549 | TTATTTGAAACTTTTCATGAGTAAGATTAGTCTACTAAATATAA |
Cao M & Helmann JD (2002): ROMA AR DB RG PE HB Cao M, et al. (2002): AR Ohki R, et al. (2003): NB RG DB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CAAAAGCCGGCGTCTGAAATCAAGACAGCCGGCTTTAATATTTCTCAT >>>>>>>>>> <<<<<<<<<<< |
ywoA |
|