Regulated Operon: ywrD

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
ywrD
- 3718161..3719738
COG0405  

Operon evidence: Northern blotting (2.0 kb transcript); upstream and downstream genes are on the opposite strand
Reference: Yoshida K, et al. (2003)
Comments: This terminator is located after the downstream gene ywrE, which is transcribed in the opposite direction.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
TnrA Positive ND 3719805..3719821 CGTCAGTTTTTCTGCCG Yoshida K, et al. (2003): AR HM GS

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
TAAAAGAACACCCCGAGCTTGCTCTGGGTGTTCTTTTTTTTGATATTT
     >>>>>>>>>>>>    <<<<<<<<<<<<
3717737..3717764
397..424
-19.5
ywrD

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai