Transcription factor: TnrA

Factor type	MerR family
SWISS-PROT	Q45666
SubtiList	BG11805
Consensus seq.	TGTNA-------TNACA
Comment	Positively regulates many genes for degrading nitrogen-containing compounds but negatively regulates glnR. Binds to the same sequence with GlnR (repressor)
Link to	Phylogenetic profile, Weight matrix, Motif alignment & Similar conserved hexameric motifs

Operon	Regulated Gene	Sigma	Regulation	Absolute position	Location	Binding seq.(cis-element)	Experimental evidence
alsT	alsT	None	Negative	`1938073..1938089`	None	TGTTAAAAAATCTAACA	Yoshida K, et al. (2003): AR HM GS
citB	citB	SigA	Positive	ND	ND	ND	Blencke HM, et al. (2006): RG
gabP	gabP	SigA	Positive	`686199..686215`	`-60:-44`	TGGTATATTTTCTTACA	Ferson AE, et al. (1996): DB DP
glnQHMP	glnQ	None	Positive	`2801106..2801122`	None	GGGTATATTTTCTGACA	Yoshida K, et al. (2003): AR HM GS
glnRA	glnR	SigA	Negative	`1877073..1877089`	`-58:-42`	TGTTAAGAATCCTTACA	Wray LV Jr, et al. (1996): DB
glnRA	glnR	SigA	Negative	`1877096..1877112`	`-35:-19`	TGACACATAATATAACA	Wray LV Jr, et al. (1996): DB
gltAB	gltA	SigA	Negative	`2013873..2013898`	`+1:+26`	AGAGTTGTTAGATTTTATGACCGGTA	Belitsky BR, et al. (2000): FT Yoshida K, et al. (2003): AR HM GS
ilvBHC-leuABCD	ilvB	SigA	Negative	`2896696..2896745`	`-210:-193`	CATATACGAACCATATCGTGTTATAAAATCTTCCATGTTTATATAAAATT	Tojo S, et al. (2004): FT
nasA	nasA	SigA	Positive	`362395..362413`	`-58:-42`	GTGTCACAAAAACTTACAC	Nakano MM, et al. (1995): DP SDM Yoshida K, et al. (2003): AR HM GS
nasBCDEF	nasB	SigA	Positive	`362395..362413`	`-58:-42`	GTGTAAGTTTTTGTGACAC	Nakano MM, et al. (1995): DP SDM Yoshida K, et al. (2003): AR HM GS
nasBCDEF	nasD	None	Positive	`357810..357826`	`-55:-39`	TGTTACATTTTATAACA	Nakano MM, et al. (1998): RG DB Yoshida K, et al. (2003): AR HM GS
nrgAB	nrgA	SigA	Positive	`3755710..3755726`	`-57:-41`	TGTCAGGAAATCTTACA	Wray LV Jr, et al. (1996): RG DB Yoshida K, et al. (2003): AR HM GS
oppABCDF	oppA	None	Positive	`1218931..1218947`	None	TGGAAGAAAAACTAACG	Yoshida K, et al. (2003): AR HM GS
pel	pel	None	Negative	`827287..827303`	None	TGGAATAAAATCTCACA	Yoshida K, et al. (2003): AR HM GS
ptb-bcd-buk-lpdV-bkdAABB	ptb	SigL	Negative	ND	ND	ND	Debarbouille M, et al. (1999): RG
pucRJKLM	pucJ	SigA	Positive	`3329388..3329404`	`-113:-97`	TGTTACATTTTCTTACA	Yoshida K, et al. (2003): AR HM GS
tnrA	tnrA	None	Positive	`1397116..1397132`	None	TGTTAGAAAATATGACA	Robichon D, et al. (2000): DE DP
yccC	yccC	SigA	Positive	`290380..290403`	`-60:-37`	TACTGAGAGAAAAGCTGACTGATC	Fisher SH & Wray LV Jr (2002): FT GS
ycsFGI-kipIAR-ycsK	ycsF	None	Positive	ND	ND	ND	Wang L, et al. (1997): DB
ykzB-ykoL	ykzB	None	Positive	`1397159..1397175`	`-57:-41`	CGGAAGAAAAATTAACA	Robichon D, et al. (2000): PE DB DP
yodF	yodF	None	Negative	`2129315..2129331`	None	TGTGATCTTTTCTTACA	Yoshida K, et al. (2003): AR HM GS
yttA	yttA	None	Negative	`3107600..3107616`	None	CGTGAAAAAATCTAACA	Yoshida K, et al. (2003): AR HM GS
ywdIJK	ywdI	None	Negative	`3895213..3895229`	None	TGTCAGAAAAAATAACA	Yoshida K, et al. (2003): AR HM GS
ywlFG	ywlF	None	Negative	`3790809..3790825`	None	TGTCAGAAAATCTGCAA	Yoshida K, et al. (2003): AR HM GS
ywrD	ywrD	None	Positive	`3719805..3719821`	None	CGTCAGTTTTTCTGCCG	Yoshida K, et al. (2003): AR HM GS
yxkC	yxkC	SigD	Negative	`3988220..3988236`	None	TCGTACATTTTATTACA	Yoshida K, et al. (2003): AR HM GS
yycCB	yycC	None	Negative	`4158535..4158551`	None	TGTGACATCTTCTTACA	Yoshida K, et al. (2003): AR HM GS