Transcription factor: TnrA

Factor type MerR family
SWISS-PROT Q45666
SubtiList BG11805
Consensus seq. TGTNA-------TNACA
Comment Positively regulates many genes for degrading nitrogen-containing compounds but negatively regulates glnR. Binds to the same sequence with GlnR (repressor)
Link to Phylogenetic profile, Weight matrix, Motif alignment & Similar conserved hexameric motifs

Operon Regulated Gene Sigma Regulation Absolute position Location Binding seq.(cis-element) Experimental evidence
alsT alsT None Negative 1938073..1938089 None TGTTAAAAAATCTAACA Yoshida K, et al. (2003): AR HM GS
citB citB SigA Positive ND ND ND Blencke HM, et al. (2006): RG
gabP gabP SigA Positive 686199..686215 -60:-44 TGGTATATTTTCTTACA Ferson AE, et al. (1996): DB DP
glnQHMP glnQ None Positive 2801106..2801122 None GGGTATATTTTCTGACA Yoshida K, et al. (2003): AR HM GS
glnRA glnR SigA Negative 1877073..1877089 -58:-42 TGTTAAGAATCCTTACA Wray LV Jr, et al. (1996): DB
glnRA glnR SigA Negative 1877096..1877112 -35:-19 TGACACATAATATAACA Wray LV Jr, et al. (1996): DB
gltAB gltA SigA Negative 2013873..2013898 +1:+26 AGAGTTGTTAGATTTTATGACCGGTA Belitsky BR, et al. (2000): FT
Yoshida K, et al. (2003): AR HM GS
ilvBHC-leuABCD ilvB SigA Negative 2896696..2896745 -210:-193 CATATACGAACCATATCGTGTTATAAAATCTTCCATGTTTATATAAAATT Tojo S, et al. (2004): FT
nasA nasA SigA Positive 362395..362413 -58:-42 GTGTCACAAAAACTTACAC Nakano MM, et al. (1995): DP SDM
Yoshida K, et al. (2003): AR HM GS
nasBCDEF nasB SigA Positive 362395..362413 -58:-42 GTGTAAGTTTTTGTGACAC Nakano MM, et al. (1995): DP SDM
Yoshida K, et al. (2003): AR HM GS
nasBCDEF nasD None Positive 357810..357826 -55:-39 TGTTACATTTTATAACA Nakano MM, et al. (1998): RG DB
Yoshida K, et al. (2003): AR HM GS
nrgAB nrgA SigA Positive 3755710..3755726 -57:-41 TGTCAGGAAATCTTACA Wray LV Jr, et al. (1996): RG DB
Yoshida K, et al. (2003): AR HM GS
oppABCDF oppA None Positive 1218931..1218947 None TGGAAGAAAAACTAACG Yoshida K, et al. (2003): AR HM GS
pel pel None Negative 827287..827303 None TGGAATAAAATCTCACA Yoshida K, et al. (2003): AR HM GS
ptb-bcd-buk-lpdV-bkdAABB ptb SigL Negative ND ND ND Debarbouille M, et al. (1999): RG
pucRJKLM pucJ SigA Positive 3329388..3329404 -113:-97 TGTTACATTTTCTTACA Yoshida K, et al. (2003): AR HM GS
tnrA tnrA None Positive 1397116..1397132 None TGTTAGAAAATATGACA Robichon D, et al. (2000): DE DP
yccC yccC SigA Positive 290380..290403 -60:-37 TACTGAGAGAAAAGCTGACTGATC Fisher SH & Wray LV Jr (2002): FT GS
ycsFGI-kipIAR-ycsK ycsF None Positive ND ND ND Wang L, et al. (1997): DB
ykzB-ykoL ykzB None Positive 1397159..1397175 -57:-41 CGGAAGAAAAATTAACA Robichon D, et al. (2000): PE DB DP
yodF yodF None Negative 2129315..2129331 None TGTGATCTTTTCTTACA Yoshida K, et al. (2003): AR HM GS
yttA yttA None Negative 3107600..3107616 None CGTGAAAAAATCTAACA Yoshida K, et al. (2003): AR HM GS
ywdIJK ywdI None Negative 3895213..3895229 None TGTCAGAAAAAATAACA Yoshida K, et al. (2003): AR HM GS
ywlFG ywlF None Negative 3790809..3790825 None TGTCAGAAAATCTGCAA Yoshida K, et al. (2003): AR HM GS
ywrD ywrD None Positive 3719805..3719821 None CGTCAGTTTTTCTGCCG Yoshida K, et al. (2003): AR HM GS
yxkC yxkC SigD Negative 3988220..3988236 None TCGTACATTTTATTACA Yoshida K, et al. (2003): AR HM GS
yycCB yycC None Negative 4158535..4158551 None TGTGACATCTTCTTACA Yoshida K, et al. (2003): AR HM GS




Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai