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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | yxeKLMNOPQ |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| yxeK | - | 4059834..4061159 | COG2141 | |||
| yxeL | - | 4059323..4059820 | COG0454 | |||
| yxeM | - | 4058504..4059298 | COG0834 | |||
| yxeN | - | 4057807..4058481 | COG0765 | |||
| yxeO | - | 4057045..4057794 | COG1126 | glnQ-BAC-3 | ||
| yxeP | - | 4055886..4057028 | COG1473 | |||
| yxeQ | - | 4054552..4055889 | COG2079 |
| Operon evidence: | lacZ assay |
|---|---|
| Reference: | Burguiere P, et al. (2004), Yoshida K, et al. (2000), BSORF |
| Comments: | Yoshida found a yxeKLMNOPQ (7.0 kb) mRNA transcript, and a yxeR-yxxB (2.4 kb) transcript by Northern blotting analysis. yxeR and yxxB monocistronic transcripts (1.4 kb and 1.0 kb, respectively) were also detected. Burguiere et al., on the other hand, show a yxeKLMNOPQR operon. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -58:+10 | 4061231..4061297 | AGAAAAAATTAATCTTAACTCATTGACAAACGTCCAAGACAAAGGTACATTTTGATTTATTCATATT |
Auger S (2003): Thesis: PE Even S, et al. (2006): PE |
| YrzC | Negative | +1:+45 | 4061195..4061239 | ATTCATATTAAACGACTAGGAATATAGGAGTTTATTTTTCGCATT |
Even S, et al. (2006): GS AR DP |
| YjbD | Negative | ND | ND | ND |
Erwin KN, et al. (2005): RG DB |
|