 |
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | bpr |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| bpr | bpf | + | 1599283..1603584 | COG4412S |
| Operon evidence: | Terminator prediction |
|---|---|
| Reference: | Tsukahara K, et al (2008) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| DegU | Positive | -155:-60 | 1599043..1599138 | TTATAAAGTCTTTTTCCCTATTGCTTCCTTCGCTTAGTAACAAAACAGATAATTAGACCCATTTATTTTTGTGACATTTTTATCATTTTCATATAT |
Tsukahara K, et al (2008): FT RG SDM |
| SigA | Promoter | -50:+10 | 1599148..1599207 | GAATGACATGAAACGACAATATCTGTAATTCAGATTGTCTACAGTTAATATACAGCGATG |
Tsukahara K, et al (2008): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TAAGTGGAAAAAAAGCTGCCGTCATTGGCAGCTTTTTTTATATCCTC >>>>>> <<<<<< |
bpr |
|