Regulated Operon: cgeCDE

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
cgeC cgeBA - 2148166..2148471

 
cgeD cgeBB - 2146821..2148101
COG0463M  
cgeE cgeBC - 2146013..2146792
COG1246E  

Operon evidence: Northern blotting (2.7 kb transcript)
Reference: Roels S & Losick R (1995)
Comments: potential readthrough terminator is located downstream of cgeC, leading to a 0.4 kb monocistronic cgeC transcript.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
GerE Positive -126:-95 2148593..2148624 CTGTTATTTGGTATGAGTCGAACGCCGTACCT Roels S, et al. (1995): HB
SigK Promoter -43:+5 2148494..2148541 CATAGCCTATACCATAAATCGAAGTCGCACATATTGTGAAACAGAGAT Roels S, et al. (1995): PE NB DB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAATTTCAAAAGAGCCTTCCTTATTAGGAAGGCTCTTTTTATGTGAAAAA
           >>>>>>>>>>    <<<<<<<<<<
2145779..2145802
211..234
-18.8
cgeE

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai