Regulated Operon: citM-yflN

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
citM yflO + 834383..835684
COG2851C citM-BAC  
yflN
+ 835740..836534
COG0491R  

Operon evidence: Northern blotting (2.4 kb transcript)
Reference: Yamamoto H, et al. (2000)
Comments: Northern blotting results in BSORF also show a monocistronic yflN transcript.

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
CcpA Negative +37:+59 834348..834370 AAAATGTAAGCGGATTCATTTAA Miwa Y, et al. (2000): RG
CitT Positive -36:-85 834227..834277 ATCAAAAAGAACAAAACGGTTTTAAAAAATTAAAAATACAAAAAAACCAAA Yamamoto H, et al. (2000): NB FT
CitT Positive -196:-168 834116..834145 AACAGCAGGGAAACGAAACGGTTTTTAGAA Yamamoto H, et al. (2000): NB FT
SigA Promoter -48:+12 834264..834323 ACAAAAAAACCAAATTATTTACTTGCGGTTGGTTTTCCCATACGATGGCAAAAAGGCAAG Yamamoto H, et al. (2000): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
TTTGACACCCGCACCACGCGGGTGTTTTTTATTGTTTTC
     >>>>>>>     <<<<<<<
836535..836553
1..19
-15.8
 yflN

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai