Regulated Operon: | gabTD |
Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
---|---|---|---|---|---|---|
gabT | ycnG | + | 441571..442881 | COG0160E | gabT-BAC | |
gabD | ycnH | + | 442950..444338 | COG1012C | gabD-BAC |
Operon evidence: | lacZ gene fusion to gabT and gabTD; 5' primer extension analysis of the downstream glcU-gdh operon; Northern blotting (2.6 kb transcript) |
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Reference: | Belitsky BR & Sonenshein AL (2002), BSORF |
Comments: | The lacZ fusions showed that an internal promoter (sigma factor unknown) exists between gabT and gabD. The Northern blotting results in BSORF only showed the gabTD transcript. |
Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
---|---|---|---|---|---|
GabR | Positive | ND | ND | ND |
Belitsky BR & Sonenshein AL (2002): PE SDM |
SigA | Promoter | -39:+18 | 441504..441560 | TTGGTACTTTTCATCATACCAAAGAGAAGTCAGAATGATAAGAAAATACCGACAGGG |
Belitsky BR & Sonenshein AL (2002): PE |
SigB | Promoter | -37:+4 | 442756..442796 | AACGGATTACTTTTGCTGACAGCGGGAATTAACGGTAATAT |
Petersohn A, et al. (1999): HB PE |
Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
---|---|---|---|---|
CCTGAGAGCTGCCGGATTTTCCGGCAGCTCTTTTTGTGTTCCGGC >>>>>>>>>>> <<<<<<<<<<< |
gabD |
|