Regulated Operon: kdgRKAT

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
kdgR
- 2324613..2325632
COG1609K  
kdgK
- 2323601..2324575
COG0524G  
kdgA
- 2323009..2323599
COG0800G  
kdgT
- 2321972..2322964

 

Operon evidence: Northern blotting (3.7 kb transcript)
Reference: Pujic P, et al. (1998)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
KdgR Negative ND ND ND Pujic P, et al. (1998): NB RG DB
SigA Promoter -43:+5 2325678..2325725 AAAAAACTCTTCCCAAATTTTAAAATTATGGTATTCTTTTGTTGTAAC Pujic P, et al. (1998): PE
CcpA Negative ND 2323226..2323248 ATTATGGAAGCGCTGACATTCGG Miwa Y, et al. (2000): RG

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAAGGCTGCCACAAAACATACCGGCAGCCTTTTATACAAACAAT
     >>>>>>>            <<<<<<<
2321939..2321964
8..33
-15.5
kdgT

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai