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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | med-comZ |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| med | yjaW | + | 1206629..1207582 | COG1744R | ||
| comZ | yjzA | + | 1207597..1207788 |
| Operon evidence: | Northern blotting (1.25 kb transcript) |
|---|---|
| Reference: | Ogura M, et al. (1997) |
| Comments: | Transcripts starting upstream of yjaU may end at the same terminator |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -40:+11 | 1206498..1206548 | AGTGGAAAAGACAATTTTCATCAATTTTCGACAAATATTAAGAAAAACCTT |
Ogura M, et al. (1997): PE HM |
| SigA | Promoter | -46:+5 | 1206498..1206548 | AGTGGAAAAGACAATTTTCATCAATTTTCGACAAATATTAAGAAAAACCTT |
Ogura M, et al. (1997): PE HM |
| Spo0A | Negative | ND | ND | ND |
Molle V, et al. (2003): GS CH |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAGAAGCCACTTTTTTGAAAGTGGCTTTTCACATGATTTT >>>>>>>> <<<<<<<< |
comZ |
|