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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | mhqED |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| yodE | mhqE | - | 2129082..2129993 | COG0346E | ||
| yodD | mhqD | - | 2128464..2129066 | COG0400R | x0117-BAC |
| Operon evidence: | Northern blotting (1.6 kb transcript) |
|---|---|
| Reference: | Towe S, et al. (2007), Nguyen VD, et al. (2007) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -50:+10 | 2130016..2130075 | TCAAAACACATGGTTTGCATCCTTTTCAATAAAGGTTTAAAATAATAAATATCTTGAAAT |
Towe S, et al. (2007): PE |
| YkvE | Negative | -10:+30 | 2129996..2130035 | AATAATAAATATCTTGAAATCGAGATAAATAGGAGTGAGA |
Towe S, et al. (2007): AR 2D-gel GS FT |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TGTATAAAAAAACCTTAGTCCGGATTTCGGACTAAGGTTTTTCATATCCTTA >>>>>>>>>>> <<<<<<<<<<< |
yodD |
|